PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1677
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 495aa    MW: 51513.8 Da    PI: 9.189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1677genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056991123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Gh_A05G1677 69 FVCEICNKGFQRDQNLQLHRRGH 91
                 89*******************88 PP

2zf-C2H215.84.1e-05145167123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC+ C+k +  +s+ k H++t+
  Gh_A05G1677 145 WKCERCSKKYAVQSDWKAHMKTC 167
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-76891No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496991IPR007087Zinc finger, C2H2
PfamPF121717.9E-56991IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355220110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-5133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.35E-7140166No hitNo description
SMARTSM0035577145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MVELENSSAM TVSTASGEAT ASSLGNQIQD NQLTGGGPPK KKRNLPGMPD PDAEVIALSP  60
KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSKEIRKRVY VCPEPSCVHH  120
NPARALGDLT GIKKHFCRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGTR EYKCDCGTIF  180
SRRDSFITHR AFCDALAEES VRTQTIGVAN PEGNKNVNGN GSGNTTMVGG GAAATLPPPQ  240
PLTPSTTSAV SPGLSIQSSE VPENPMGLSP AAATTATTNV FASIFAPNSQ PSKISAPSSF  300
LQATTPLERT SLSLSSPLYL SNNGSSIFAG PENDHCHYAP SPQPAMSATA LLQKAAQMGA  360
AASNPSLLRG LGLAVSSASP AGQDPNVKSE SNTATASLGL GFPSNGSSGL TNPIIGSSSL  420
FGNKPTTLDL LGLGMADSGA SSSGLSALLT SFGGGFNVGA ATATSYGAGG SNNSPRETWE  480
GGAERKPNGP ANAML
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.79370.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5261153e-44HQ526115.1 Gossypium herbaceum clone NBRI_D2_1707 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444978.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-144IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A0B0PUR90.0A0A0B0PUR9_G
STRINGPOPTR_0002s26430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-129indeterminate(ID)-domain 2